As new publications are available from The Center of Bioenergy Innovation (CBI) researchers, information about the publications will be available on this site.

 

Date Published Publication Title Authors
2018-07-02 Genes, Genomes and Genetics A variable polyglutamine repeat affects subcellular localization and regulatory activity of a Populus ANGUSTIFOLIA protein Bryan, A.C., Zhang, J, Guo, J., Ranjan, P., Singan, V., Barry, K., Schmutz, J., Weighill, D., Jacobson, D., Jawdy, S., Tuskan, G.A., Chen, J-C., Muchero, W.
2018-07-02 New Phytologist Elicitors and defense gene induction in plants with altered lignin compositions Gallego-Giraldo, L., Pose, S., Pattathil, S., Peralta, A.G., Hahn, M.G., Ayre, B.G., Sunuwar, J., Herandez, J., Patel, M., Shah, J., Rao, X., Knox, J.P., Dixon, R.A.
2018-07-02 Genes, Genomes and Genetics Accuracy of genomic prediction for foliar terpene traits in eucalyptus polybractea Kainer, D., Stone, E.A., Padovan, A., Foley, W.J., Kulheim, C.
2018-06-19 Biotechnology Journal CRISPR-enabled tools for engineering microbial genomes and phenotypes Tarasava, K., Oh, E.J., Eckert, C.A., Gill, R.T.
2018-06-14 Journal of Industrial Microbiology and Biotechnology Deletion of the Clostridium thermocellum recA gene reveals that it is required for thermophilic plasmid replication but not plasmid integration at homologous DNA sequences Groom, J., Chung, C., Kim, S-K., Guss, A., and Westpheling, J.
2018-05-11 Biotechnology and Bioengineering Building a genome engineering toolbox in nonmodel prokaryotic microbes Freed, E., Fenster, J., Smolinski, S.L., Walker, J., Henard, C.A., Gill, R., Eckert, C.A.
2018-04-18 Metabolic Engineering Communications Identification of parallel and divergent optimization solutions for homologous metabolic enzymes Standaert, R.F., Giannone, R.J., Michener, J.K.
2018-04-17 Energy and Environmental Science Thermochemical wastewater valorization via enhanced microbial toxicity tolerance Jayakody, L.N., Johnson, C.W., Whitham, J.M., Giannone, R.J., Black, B.A., Cleveland, N.S., Klingeman, D.M., Michener, W.E., Olstad, J.L., Vardon, D.R., Brown, R.C., Brown, S.D., Hettich, R.L., Guss, A.M., Beckham, G.T.
2018-04-12 PLOS One The redox-sensing protein Rex modulates ethanol production in Thermoanaerobacterium saccharolyticum Zheng, T., Lanahan, A.A., Lynd, L.R., Olson, D.G.
2018-04-11 ACS Sustainable Chemistry & Engineering Fast Fractionation of Technical Lignins by Organic Cosolvents Yun-Yan Wang, Mi Li, Charles E. Wyman, Charles M. Cai, Arthur J. Ragauskas
2018-04-10 Green Chemistry Recent advances in understanding the pseudo-lignin formation in a lignocellulosic biorefinery Somnath D. Shinde, Xianzhi Meng, Rajeev Kumarbcd, Arthur J. Ragauskas
2018-04-06 Frontiers in Energy Research Pleiotropic and Epistatic Network-Based Discovery: Integrated Networks for Target Gene Discove Weighill, D., Sykes, R., Zhao, N., Martin, M., DiFazio, S., Tschaplinski, T., Tuskan, G.A, Jacobson, D., Macaya Sanz, D., Sreedasyam, A., Schmutz, J., Muchero, W., Ranjan, P., Shah, M., Jones, P.
2018-04-04 Biochemical Society Transactions Exploring the combinatorial space of complete pathways to chemicals Lin Wang, Chiam Yu Ng, Satyakam Dash, Costas D. Maranas
2018-03-23 Biotechnology for Biofuels The diversity and specificity of the extracellular proteome in the cellulolytic bacterium Caldicellulosiruptor bescii is driven by the nature of the cellulosic growth substrate Poudel, S., Giannone, R.J., Basen, M., Nookaew, I., Poole II, F.L., Kelly, R.M., Adams, M.W.W., Hettich, R.L.
2018-03-19 Frontiers in Plant Science Current Models for Transcriptional Regulation of Secondary Cell Wall Biosynthesis in Grasses Rao, X., Dixon, R.A.
2018-03-01 Journal of Sustainable Bioenergy Systems Phenotyping Winter Dormancy in Switchgrass to Extend the Growing Season and Improve Biomass Yield Rasyidah Mohamad Razar, Ali Missaoui
2018-02-20 New Phytologist Identification of an algal xylan synthase indicates that there is functional orthology between algal and plant cell wall biosynthesis Jensen, J.K., Busse-Wicher, M., Pulsen, C.P., Fangel, J.U., Smith, P.J., Yang, J-Y., Pena, M.J., Dinesen, M.H., Martens, H.J., Melkonian, M., Wong, G.K-S., Moremen, K.W., Wilkerson, C.G., Scheller, H.V., Dupree, P., Ulvskov, P., Urbanowicz, B.R., Harholt, J.
2018-02-15 ACS Sustainable Chemistry & Engineering Significance of lignin S/G ratio in biomass recalcitrance of Populus trichocarpa variants for bioethanol production Yoo, C.G., Dumitrache, A., Muchero, W., Natzke, J., Akinosho, H., Li, M., Sykes, R.W., Brown, S.D., Davison, B.H., Tuskan, G.A., Pu, Y., Ragauskas, A.J.
2018-02-15 PLOS ONE Quantitative proteome profile of water deficit stress responses in eastern cottonwood (Populus deltoides) leaves Abraham, P.E., Garcia, B.J., Gunter, L.E., Jawdy, S.S., Engle, N., Yang, Y., Jacobson, D.A., Hettich, R.L., Tuskan, G.A., Tschaplinski, T.J.
2018-02-12 Nature Biotechnology Sugar release and growth of biofuel crops are improved by downregulation of pectin biosynthesis Biswal, A.K., Atmodjo, M.A., Li, M., Baxter, H.L., Yoo, C.G., Pu, Y.J., Lee, Y-C., Mazarei, M., Black, I.M., Zhang, J-Y., Ramanna, H., Bray, A.L., King, Z.R., LaFayette, P.R., Pattathil, S., Donohoe, B.S., Mohanty, S.S., Ryno, D., Yee, K., Thompson, O.A.,
2018-02-06 Biotechnology for Biofuels High activity CAZyme cassette for improving biomass degradation in thermophiles Roman Brunecky, Daehwan Chung, Nicholas S. Sarai, Neal Hengge, Jordan F. Russell, Jenna Young, Ashutosh Mittal, Patthar Pason, Todd Vander Wall, William Michener, Todd Shollenberger, Janet Westpheling, Michael E. Himmel and Yannick J. Bomble
2018-01-31 ChemBioChem Analyzing Xyloglucan Endotransglycosylases by Incorporating Synthetic Oligosaccharides into Plant Cell Walls Ruprecht, C., Dallabermardina, P., Smith, P.J, Urbanowicz, B.R., Pfrengle, F.
2018-01-14 Biotechnology for Biofuels Working towards recalcitrance mechanisms: increased xylan and homogalacturonan production by overexpression of GAlactUronosylTransferase12 (GAUT12) causes increased recalcitrance and decreased growth in Populus Biswal, A.K., Atmodjo, M.A., Pattathil, S., Amos, R.A., Yang, X., Winkeler, K., Collins, C., Mohanty, S.S., Ryno, D., Tan, L., Gelineo-Albersheim, I., Hunt, K., Sykes, R.W., Turner, G.B., Ziebell, A., Davis, M.F., Decker, S.R., Hahn, M.G., Mohnen, D.
2018-01-12 Nature Comunications Pathway design using de novo steps through uncharted biochemical spaces Akhil Kumar , Lin Wang, Chiam Yu Ng, Costas D. Maranas
2015-06-05 The Plant Cell A 5-enolpyruvylshikimate 3-phosphate synthase functions as a transcriptional repressor in Populus Xie, M., Muchero, W., Bryan, A.C., Yee, K., Guo, H-B., Zhang, J., Tschaplinski, T.J., Singan, V.R., Lindquist, E., Payyavula, R.S., Barros-Rios, J., Dixon, R., Engle, N., Sykes, R.W., Davis, M., Jawdy, S.S., Gunter, L.E., Thompson, O., DiFazio, S.P., Evans, M., Winkeler, K., Collins, C., Schmutz, J., Guo, H., Kalluri, U., Rodriguez, M., Feng, K., Chen, J-G., Tuskan, G.A.